50942caf-a62e-44c7-9998-e2a949aa85b2 http://ipt.gbif.pt/ipt/resource?r=plecoptera_01 The InBIO Barcoding Initiative Database: contribution to the knowledge on DNA barcodes of Iberian Plecoptera Sónia Ferreira CIBIO-InBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, Universidade do Porto Post-Doc Researcher
PT
+351 252660411 hiporame@gmail.com 0000-0002-6884-3966
J. Manuel Tierno de Figueroa Universidad de Granada Full Professor
ES
0000-0003-1616-9815
Filipa M S Martins CIBIO-InBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, Universidade do Porto PhD student
PT
filipamsmartins@gmail.com 0000-0003-4191-5031
Joana Veríssimo CIBIO-InBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, Universidade do Porto PhD student
PT
joana.filipa.verissimo@gmail.com 0000-0002-8721-9376
Lorenzo Quaglietta CIBIO-InBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, Universidade do Porto Post-Doc Researcher
PT
lorenzo.quaglietta@cibio.up.pt 0000-0002-9703-0171
José M. Grosso-Silva Museu de História Natural e da Ciência da Universidade do Porto Entomology Curator
PT
jmgrossosilva@gmail.com 0000-0002-1094-0771
Pedro Brito Lopes Researcher
Rua do Torgal, nº 16 (Trigais) Covilhã PT
0000-0002-5078-0602
Pedro Sousa CIBIO-InBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, Universidade do Porto Post-Doc Researcher
PT
+351 252660411 psousa@cibio.up.pt 0000-0002-5859-9656
Pedro Beja CIBIO-InBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, Universidade do Porto Coordinating Researcher
PT
+351 252660411 pbeja@cibio.up.pt 0000-0001-8164-0760
Sónia Ferreira CIBIO-InBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, Universidade do Porto Post-Doc Researcher
PT
+351 252660411 hiporame@gmail.com 0000-0002-6884-3966
J. Manuel Tierno de Figueroa Universidad de Granada Full Professor
ES
jmtdef@ugr.es 0000-0003-1616-9815
Filipa M S Martins CIBIO-InBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, Universidade do Porto PhD student
PT
filipamsmartins@gmail.com 0000-0003-4191-5031
Joana Veríssimo CIBIO-InBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, Universidade do Porto PhD student
PT
joana.filipa.verissimo@gmail.com 0000-0002-8721-9376
Lorenzo Quaglietta CIBIO-InBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, Universidade do Porto Post-Doc Researcher
PT
+351 252660411 lorenzo.quaglietta@cibio.up.pt 0000-0002-9703-0171
José M. Grosso-Silva Museu de História Natural e da Ciência da Universidade do Porto Entomology Curator
PT
jmgrossosilva@gmail.com 0000-0002-1094-0771
Pedro Brito Lopes Researcher
Rua do Torgal, nº 16 (Trigais) Covilhã PT
pedro.lopes275@gmail.com 0000-0002-5078-0602
Pedro Sousa CIBIO-InBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, Universidade do Porto Post-Doc Researcher
PT
+351 252660411 psousa@cibio.up.pt 0000-0002-5859-9656
Pedro Beja CIBIO-InBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, Universidade do Porto Coordinating Researcher
PT
+351 252660411 pbeja@cibio.up.pt 0000-0001-8164-0760
2021-01-05 eng The dataset contains 71 records of Plecoptera specimens collected from 2004 to 2018 in the Iberian Peninsula (Ferreira et al., 2020). Twenty-nine stoneflies species are represented in the dataset, contributing to the knowledge on the DNA barcodes and distribution of the Plecoptera in Iberia. Specimens were captured during fieldwork directed specifically for the sampling of Plecoptera using different methodologies and stored in 96% ethanol. All specimens were morphologically identified to species level. Specimens were captured during fieldwork directed specifically for the sampling of Plecoptera using different methodologies and stored in 96% ethanol. A tissue sample, usually a leg, was collected from each individual, from which DNA was extracted. The DNA barcoding of these specimens was conducted within the InBIO Barcoding Initiative (IBI), funded by EnvMetaGen and PORBIOTA projects. DNA barcode sequences were deposited in BOLD (Barcode of Life Data System) online database. Preserved specimens and DNA extracts are deposited in the IBI collection at the CIBIO (Research Center in Biodiversity and Genetic Resources). Plecoptera n/a Occurrence records n/a Species distributions n/a Continental Portugal n/a Continental Spain n/a DNA barcode n/a Cytochrome c oxidase I (COI) n/a Occurrence GBIF Dataset Type Vocabulary: http://rs.gbif.org/vocabulary/gbif/dataset_type.xml Specimen GBIF Dataset Subtype Vocabulary: http://rs.gbif.org/vocabulary/gbif/dataset_subtype.xml Occurrence GBIF Dataset Type Vocabulary: http://rs.gbif.org/vocabulary/gbif/dataset_type_2015-07-10.xml This work is licensed under a Creative Commons Attribution (CC-BY) 4.0 License. http://www.boldsystems.org/index.php/Public_SearchTerms?query=DS-IBIPP01 Iberian Peninsula -7.749 3.036 42.506 36.617 2004-06-22 2018-05-19 This dataset is composed of data relating to 71 Plecoptera specimens. All specimens were determined to species level. Overall, 29 species are represented in the dataset. These species belong to 16 genera and 7 families. kingdom Animalia phylum Arthropoda class Insecta order Plecoptera family Capniidae family Chloroperlidae family Leuctridae family Nemouridae family Perlidae family Perlodidae family Taeniopterygidae The InBIO Barcoding Initiative (IBI) aims to develop a reference collection of DNA barcoding sequences primarily covering Portuguese invertebrate taxa providing a tool in ecological studies. asNeeded Pedro Beja CIBIO-InBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, Universidade do Porto Coordinating Researcher
PT
+351 252660411 pbeja@cibio.up.pt 0000-0001-8164-0760
Sónia Ferreira CIBIO-InBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, Universidade do Porto Post-Doc Researcher
PT
+351 252660411 hiporame@gmail.com 0000-0002-6884-3966
Specimens were collected in 40 different localities of Iberian Peninsula. Sampling was conducted from 2004 to 2018, and consisted of direct search of specimens on rocks and vegetation of streams and river margins, and in the use of entomological nets to intercept specimens flight. Specimens collected were stored in 96% ethanol. A tissue sample (leg) was removed, from which DNA was extracted and the COI DNA barcode fragment was sequenced. Data generated were submitted to BOLD, GenBank and GBIF. Iberian Peninsula. The studied material was collected in 40 different localities from Iberian Peninsula. Sampling was conducted between 2004 and 2018 on a wide range of habitats, using mainly hand-held sweep-nets or direct search for specimens. Collected specimens were examined in ethanol using a binocular stereoscopic microscope, and they were stored in 96% ethanol for downstream molecular analysis. Morphological identification was performed using keys and descriptions from literature (mainly Tierno de Figueroa et al. 2003 , Tierno de Figueroa et al. 2015). All DNA barcodes sequences were compared against the BOLD database and the 99 top hits were inspected in order to detect possible issues due to contaminations or misidentifications. Prior submission to GBIF, data was checked for errors and inconsistencies with OpenRefine 3.2 (http://openrefine.org). The InBIO Barcoding Initiative Database: contribution to the knowledge on DNA barcodes of Iberian Plecoptera Sónia Ferreira 0000-0002-6884-3966 author J. Manuel Tierno de Figueroa 0000-0003-1616-9815 author Filipa Martins 0000-0003-4191-5031 author Joana Veríssimo 0000-0002-8721-9376 author Lorenzo Quaglietta 0000-0002-9703-0171 author José M. Grosso-Silva 0000-0002-1094-0771 author Pedro Brito Lopes 0000-0002-5078-0602 author Pedro Sousa 0000-0002-5859-9656 originator Pedro Beja 0000-0001-8164-0760 author The InBIO Barcoding Initiative aims to develop a reference collection of DNA barcoding sequences covering Portuguese invertebrate taxa. Within the project, a special focus is afforded to insects, given their relevance to food webs, ecosystems functioning, high diversity and limited number of DNA barcoding sequences of interest. This project has received funding from the European Union’s Horizon 2020 Research and Innovation programme under grant agreement No 668981 and by the project PORBIOTA— Portuguese E-Infrastructure for Information and Research on Biodiversity (POCI-01-0145-FEDER- 022127), supported by Operational Thematic Program for Competitiveness and Internationalization (POCI), under the PORTUGAL 2020 Partnership Agreement, through the European Regional Development Fund (FEDER), by EDP Biodiversity Chair, and is part of the research conducted at the Long Term Research Site of Baixo Sabor, (LTER_EU_PT_002). FMSM was supported by FCT PhD grant SFRH/BD/104703/2014, and JV by FCT PhD grant SFRH/BD/133159 /2017. Iberian Peninsula. Specimens were collected in field work carried out between 2004 and 2018. They were morphologically identified and DNA barcoded.
2020-05-11T10:47:28.300+01:00 dataset Ferreira S, Tierno de Figueroa J M, Martins F M S, Veríssimo J, Quaglietta L, Grosso-Silva J M, Lopes P B, Sousa P, Beja P (2020): The InBIO Barcoding Initiative Database: contribution to the knowledge on DNA barcodes of Iberian Plecoptera. v1.4. CIBIO (Research Center in Biodiversity and Genetic Resources) Portugal. Occurrence dataset https://doi.org/10.15468/3vkdr2 Tierno de Figueroa J, Sánchez-Ortega A, Membiela-Iglesia P, Luzón-Ortega J (2003). Plecoptera. Fauna Ibérica. CSIC, Madrid, 404 pp. Tierno de Figueroa J, Luzón-Ortega J, López-Rodríguez M (2015) Orden Plecoptera. In: IBERFAUNA. El Banco de Datos de la Fauna Ibérica. Museo Nacional de Ciencias Naturales (CSIC). http://iberfauna.mncn.csic.es/showficha.aspx?rank=J&idtax=571. Accessed on: 2020-4-09. Ferreira, S., Tierno de Figueroa, J.M., Martins, F.M., Verissimo, J., Quaglietta, L., Grosso-Silva, J.M., Lopes, P.B., Sousa, P., Paupério, J., Fonseca, N.A. & Beja, P. (2020). The InBIO Barcoding Initiative Database: contribution to the knowledge on DNA barcodes of Iberian Plecoptera. Biodiversity Data Journal, 8: e55137. https://doi.org/10.3897/BDJ.8.e55137 4ec2b246-f5fa-4b90-9a8d-ddafc2a3f970 InBIO Barcoding Initiative alcohol Voucher tube 1 71 DNA extractions 1 71 50942caf-a62e-44c7-9998-e2a949aa85b2/v1.5.xml