50942caf-a62e-44c7-9998-e2a949aa85b2
http://ipt.gbif.pt/ipt/resource?r=plecoptera_01
The InBIO Barcoding Initiative Database: contribution to the knowledge on DNA barcodes of Iberian Plecoptera
Sónia
Ferreira
CIBIO-InBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, Universidade do Porto
Post-Doc Researcher
PT
+351 252660411
hiporame@gmail.com
0000-0002-6884-3966
J. Manuel
Tierno de Figueroa
Universidad de Granada
Full Professor
ES
0000-0003-1616-9815
Filipa M S
Martins
CIBIO-InBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, Universidade do Porto
PhD student
PT
filipamsmartins@gmail.com
0000-0003-4191-5031
Joana
Veríssimo
CIBIO-InBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, Universidade do Porto
PhD student
PT
joana.filipa.verissimo@gmail.com
0000-0002-8721-9376
Lorenzo
Quaglietta
CIBIO-InBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, Universidade do Porto
Post-Doc Researcher
PT
lorenzo.quaglietta@cibio.up.pt
0000-0002-9703-0171
José M.
Grosso-Silva
Museu de História Natural e da Ciência da Universidade do Porto
Entomology Curator
PT
jmgrossosilva@gmail.com
0000-0002-1094-0771
Pedro Brito
Lopes
Researcher
Rua do Torgal, nº 16 (Trigais)
Covilhã
PT
0000-0002-5078-0602
Pedro
Sousa
CIBIO-InBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, Universidade do Porto
Post-Doc Researcher
PT
+351 252660411
psousa@cibio.up.pt
0000-0002-5859-9656
Pedro
Beja
CIBIO-InBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, Universidade do Porto
Coordinating Researcher
PT
+351 252660411
pbeja@cibio.up.pt
0000-0001-8164-0760
Sónia
Ferreira
CIBIO-InBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, Universidade do Porto
Post-Doc Researcher
PT
+351 252660411
hiporame@gmail.com
0000-0002-6884-3966
J. Manuel
Tierno de Figueroa
Universidad de Granada
Full Professor
ES
jmtdef@ugr.es
0000-0003-1616-9815
Filipa M S
Martins
CIBIO-InBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, Universidade do Porto
PhD student
PT
filipamsmartins@gmail.com
0000-0003-4191-5031
Joana
Veríssimo
CIBIO-InBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, Universidade do Porto
PhD student
PT
joana.filipa.verissimo@gmail.com
0000-0002-8721-9376
Lorenzo
Quaglietta
CIBIO-InBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, Universidade do Porto
Post-Doc Researcher
PT
+351 252660411
lorenzo.quaglietta@cibio.up.pt
0000-0002-9703-0171
José M.
Grosso-Silva
Museu de História Natural e da Ciência da Universidade do Porto
Entomology Curator
PT
jmgrossosilva@gmail.com
0000-0002-1094-0771
Pedro Brito
Lopes
Researcher
Rua do Torgal, nº 16 (Trigais)
Covilhã
PT
pedro.lopes275@gmail.com
0000-0002-5078-0602
Pedro
Sousa
CIBIO-InBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, Universidade do Porto
Post-Doc Researcher
PT
+351 252660411
psousa@cibio.up.pt
0000-0002-5859-9656
Pedro
Beja
CIBIO-InBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, Universidade do Porto
Coordinating Researcher
PT
+351 252660411
pbeja@cibio.up.pt
0000-0001-8164-0760
2021-01-05
eng
The dataset contains 71 records of Plecoptera specimens collected from 2004 to 2018 in the Iberian Peninsula (Ferreira et al., 2020). Twenty-nine stoneflies species are represented in the dataset, contributing to the knowledge on the DNA barcodes and distribution of the Plecoptera in Iberia. Specimens were captured during fieldwork directed specifically for the sampling of Plecoptera using different methodologies and stored in 96% ethanol. All specimens were morphologically identified to species level. Specimens were captured during fieldwork directed specifically for the sampling of Plecoptera using different methodologies and stored in 96% ethanol. A tissue sample, usually a leg, was collected from each individual, from which DNA was extracted. The DNA barcoding of these specimens was conducted within the InBIO Barcoding Initiative (IBI), funded by EnvMetaGen and PORBIOTA projects. DNA barcode sequences were deposited in BOLD (Barcode of Life Data System) online database. Preserved specimens and DNA extracts are deposited in the IBI collection at the CIBIO (Research Center in Biodiversity and Genetic Resources).
Plecoptera
n/a
Occurrence records
n/a
Species distributions
n/a
Continental Portugal
n/a
Continental Spain
n/a
DNA barcode
n/a
Cytochrome c oxidase I (COI)
n/a
Occurrence
GBIF Dataset Type Vocabulary: http://rs.gbif.org/vocabulary/gbif/dataset_type.xml
Specimen
GBIF Dataset Subtype Vocabulary: http://rs.gbif.org/vocabulary/gbif/dataset_subtype.xml
Occurrence
GBIF Dataset Type Vocabulary: http://rs.gbif.org/vocabulary/gbif/dataset_type_2015-07-10.xml
This work is licensed under a Creative Commons Attribution (CC-BY) 4.0 License.
http://www.boldsystems.org/index.php/Public_SearchTerms?query=DS-IBIPP01
Iberian Peninsula
-7.749
3.036
42.506
36.617
2004-06-22
2018-05-19
This dataset is composed of data relating to 71 Plecoptera specimens. All specimens were determined to species level. Overall, 29 species are represented in the dataset. These species belong to 16 genera and 7 families.
kingdom
Animalia
phylum
Arthropoda
class
Insecta
order
Plecoptera
family
Capniidae
family
Chloroperlidae
family
Leuctridae
family
Nemouridae
family
Perlidae
family
Perlodidae
family
Taeniopterygidae
The InBIO Barcoding Initiative (IBI) aims to develop a reference collection of DNA barcoding sequences primarily covering Portuguese invertebrate taxa providing a tool in ecological studies.
asNeeded
Pedro
Beja
CIBIO-InBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, Universidade do Porto
Coordinating Researcher
PT
+351 252660411
pbeja@cibio.up.pt
0000-0001-8164-0760
Sónia
Ferreira
CIBIO-InBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, Universidade do Porto
Post-Doc Researcher
PT
+351 252660411
hiporame@gmail.com
0000-0002-6884-3966
Specimens were collected in 40 different localities of Iberian Peninsula. Sampling was conducted from 2004 to 2018, and consisted of direct search of specimens on rocks and vegetation of streams and river margins, and in the use of entomological nets to intercept specimens flight. Specimens collected were stored in 96% ethanol. A tissue sample (leg) was removed, from which DNA was extracted and the COI DNA barcode fragment was sequenced. Data generated were submitted to BOLD, GenBank and GBIF.
Iberian Peninsula.
The studied material was collected in 40 different localities from Iberian Peninsula. Sampling was conducted between 2004 and 2018 on a wide range of habitats, using mainly hand-held sweep-nets or direct search for specimens. Collected specimens were examined in ethanol using a binocular stereoscopic microscope, and they were stored in 96% ethanol for downstream molecular analysis. Morphological identification was performed using keys and descriptions from literature (mainly Tierno de Figueroa et al. 2003 , Tierno de Figueroa et al. 2015).
All DNA barcodes sequences were compared against the BOLD database and the 99 top hits were inspected in order to detect possible issues due to contaminations or misidentifications. Prior submission to GBIF, data was checked for errors and inconsistencies with OpenRefine 3.2 (http://openrefine.org).
The InBIO Barcoding Initiative Database: contribution to the knowledge on DNA barcodes of Iberian Plecoptera
Sónia
Ferreira
0000-0002-6884-3966
author
J. Manuel
Tierno de Figueroa
0000-0003-1616-9815
author
Filipa
Martins
0000-0003-4191-5031
author
Joana
Veríssimo
0000-0002-8721-9376
author
Lorenzo
Quaglietta
0000-0002-9703-0171
author
José M.
Grosso-Silva
0000-0002-1094-0771
author
Pedro Brito
Lopes
0000-0002-5078-0602
author
Pedro
Sousa
0000-0002-5859-9656
originator
Pedro
Beja
0000-0001-8164-0760
author
The InBIO Barcoding Initiative aims to develop a reference collection of DNA barcoding sequences covering Portuguese invertebrate taxa. Within the project, a special focus is afforded to insects, given their relevance to food webs, ecosystems functioning, high diversity and limited number of DNA barcoding sequences of interest.
This project has received funding from the European Union’s Horizon 2020 Research and Innovation programme under grant agreement No 668981 and by the project PORBIOTA— Portuguese E-Infrastructure for Information and Research on Biodiversity (POCI-01-0145-FEDER- 022127), supported by Operational Thematic Program for Competitiveness and Internationalization (POCI), under the PORTUGAL 2020 Partnership Agreement, through the European Regional Development Fund (FEDER), by EDP Biodiversity Chair, and is part of the research conducted at the Long Term Research Site of Baixo Sabor, (LTER_EU_PT_002). FMSM was supported by FCT PhD grant SFRH/BD/104703/2014, and JV by FCT PhD grant SFRH/BD/133159 /2017.
Iberian Peninsula.
Specimens were collected in field work carried out between 2004 and 2018. They were morphologically identified and DNA barcoded.
2020-05-11T10:47:28.300+01:00
dataset
Ferreira S, Tierno de Figueroa J M, Martins F M S, Veríssimo J, Quaglietta L, Grosso-Silva J M, Lopes P B, Sousa P, Beja P (2020): The InBIO Barcoding Initiative Database: contribution to the knowledge on DNA barcodes of Iberian Plecoptera. v1.4. CIBIO (Research Center in Biodiversity and Genetic Resources) Portugal. Occurrence dataset https://doi.org/10.15468/3vkdr2
Tierno de Figueroa J, Sánchez-Ortega A, Membiela-Iglesia P, Luzón-Ortega J (2003). Plecoptera. Fauna Ibérica. CSIC, Madrid, 404 pp.
Tierno de Figueroa J, Luzón-Ortega J, López-Rodríguez M (2015) Orden Plecoptera. In: IBERFAUNA. El Banco de Datos de la Fauna Ibérica. Museo Nacional de Ciencias Naturales (CSIC). http://iberfauna.mncn.csic.es/showficha.aspx?rank=J&idtax=571. Accessed on: 2020-4-09.
Ferreira, S., Tierno de Figueroa, J.M., Martins, F.M., Verissimo, J., Quaglietta, L., Grosso-Silva, J.M., Lopes, P.B., Sousa, P., Paupério, J., Fonseca, N.A. & Beja, P. (2020). The InBIO Barcoding Initiative Database: contribution to the knowledge on DNA barcodes of Iberian Plecoptera. Biodiversity Data Journal, 8: e55137. https://doi.org/10.3897/BDJ.8.e55137
4ec2b246-f5fa-4b90-9a8d-ddafc2a3f970
InBIO Barcoding Initiative
alcohol
Voucher tube
1
71
DNA extractions
1
71
50942caf-a62e-44c7-9998-e2a949aa85b2/v1.5.xml