HiDaFernPT: Historical data of spore availability for 121 fern and lycopod taxa in Portugal (1926 – 2013)

資料紀錄

此資源出現紀錄的資料已發佈為達爾文核心集檔案（DwC-A），其以一或多組資料表構成分享生物多樣性資料的標準格式。 核心資料表包含 3,383 筆紀錄。

此 IPT 存放資料以提供資料儲存庫服務。資料與資源的詮釋資料可由「下載」單元下載。「版本」表格列出此資源的其它公開版本，以便利追蹤其隨時間的變更。

版本

以下的表格只顯示可公開存取資源的已發布版本。

如何引用

研究者應依照以下指示引用此資源。:

Timóteo S, Heleno R, Covelo F, Santos J, Lopes P, Gouveia A C, Matos A, Salgado A, Girão da Cruz M T, Farminhão J, Horta M, Barreto G, Marques A V, Craveiro L, Pinto P, Santos M, Nunes B, Barreiro M, Dias A, Rodrigues G, Esteves L, Wanderley M, Santos I, Artiaga J P, Veríssimo J, Vilhena I, Moniz L, Leão A, Couras M, Mendes S B, Nereu M, Silva A M D D, Sales F, Gonçalves M T, Coutinho A, Freitas H, Silva J S, Ramos J, Marchante E, Costa J M (2023). Historical data of spore availability for 109 spontaneous and cultivated ferns and lycopods taxa in Portugal (1926 – 2013). Version 1.0. No organization. Occurrence dataset. http://194.210.120.147:8080/resource?r=ferns_lycopods_jbuc_is&v=1.0

權利

研究者應尊重以下權利聲明。:

此資料的發布者及權利單位為 Jardim Botânico da Universidade de Coimbra。 This work is licensed under a Creative Commons Attribution Non Commercial (CC-BY-NC 4.0) License.

GBIF 註冊

此資源已向GBIF註冊，並指定以下之GBIF UUID: 3de9aa6f-1f17-43d6-b46c-d6f5ada0b562。  Jardim Botânico da Universidade de Coimbra 發佈此資源，並經由GBIF Portugal同意向GBIF註冊成為資料發佈者。

關鍵字

Occurrence; Ferns; Lycopods; Historical data; Index Seminum; Spores; Portugal

聯絡資訊

地理涵蓋範圍

Mainland Portugal

分類群涵蓋範圍

Plants identified to species or infraspecific level.

時間涵蓋範圍

計畫資料

無相關描述

取樣方法

This dataset includes the records of ferns and lycopods spores collected since 1926 by the staff of the Botanic Garden of the University of Coimbra. It includes the date, location, and species or infraspecific taxa for the spores collected every year to integrate the Botanic Garden of the University of Coimbra Index Seminum.

方法步驟描述:

1. Taxonomic harmonization: - initial verification by botanist from the Herbarium of the University of Coimbra, to check small typos and authorities misspellings; - harmonization through the Global Name Resolver using function gnr_resolve from the R (R Core Team 2023) package taxixe 0.9.9 (Chamberlain & Szöcs 2013, Chamberlain et al. 2020), against the Global Biodiversity Information Facility - GBIF backbone, accessed on 2023-03-01; - species classification as native or introduced to Portugal based on the World Checklist of Vascular Plants - WCVP (Govaerts et al. 2021), using function wcvp_distribution from the R package rWCVP (Brown et al. 2023), accessed on 2023-06-28. The data set includes the original name, and the harmonized taxonomy based on GBIF and WCVP. Georeferencing protocol: - original record of collection localities clustered based on textual description using OpenRefine, followed by manual inspection; - locations georeferenced with point-radius georeferencing method (Chapman & Wieczorek 2020, Zermoglio et al. 2020), with geographic coordinates, and corresponding confidence intervals, obtained with Maps.ie (Maps.ie 2023), and uncertainty obtained with Georeferencing Calculator (Bloom et al. 2020; Wieczorek et al. 2021); - administrative levels obatined with Google Geocoding API through the Reverse Geocoding Service (Google 2022); - elevation retrieved with Google Elevation API.

引用文獻

1. R Core Team. (2023). R: A language and environment for statistical computing.
2. Chamberlain, S.A. & Szöcs, E. (2013). taxize: taxonomic search and retrieval in R. F1000Research. 10.12688/f1000research.2-191.v2
3. Chamberlain, S., Szoecs, E., Foster, Z., Arendsee, Z., Boettiger, C., Ram, K., Bartomeus, I., Baumgartner, J., O’Donnell, J. & Oksanen, J. (2020). taxize: Taxonomic information from around the web. R package version 0.9, 92.
4. Govaerts, R., Nic Lughadha, E., Black, N., Turner, R. & Paton, A. (2021). The World Checklist of Vascular Plants, a continuously updated resource for exploring global plant diversity. Scientific Data 8, 215. 10.1038/s41597-021-00997-6
5. Brown, M.J.M., Walker, B.E., Black, N., Govaerts, R.H.A., Ondo, I., Turner, R. & Nic Lughadha, E. (2023). rWCVP: a companion R package for the World Checklist of Vascular Plants. New Phytologist, 1–10. 10.1111/nph.18919
6. Chapman, A. D. & Wieczorek, J. R. (2020). Georeferencing best practices. Version 1.0. 10.15468/doc-gg7h-s853
7. Zermoglio P.F., Chapman A.D., Wieczorek J.R., Luna M.C. & Bloom D.A. (2020). Georeferencing Quick Reference Guide. Copenhagen: GBIF Secretariat 10.35035/e09p-h128
8. Maps.ie. (2023). https://www.maps.ie/draw-radius-circle-map. Accessed on 2023-03-20.
9. Bloom, D. A., Wieczorek, J. R. & Zermoglio, P. F. (2020). Georeferencing Calculator Manual. Copenhagen: GBIF Secretariat. Version 1.0. 10.35035/gdwq-3v93
10. Wieczorek, C. & Wieczorek, J. (2020). Georeferencing Calculator; http://georeferencing.org/georefcalculator/gc.html. Accessed on 2022-08-29, 2021.
11. Google. (2022). Google Geocoding API https://developers.google.com/maps/documentation/geocoding/start. Accessed on 2022-08-29.

額外的詮釋資料