Описание
The dataset contains eight records of moth specimens of the genus Ypsolopha collected from 2015 to 2017 in continental Portugal. The study of these specimens resulted in the description of a new species, Y. rhinolophi (Corley, 2019), present in northern Portugal and south-east France, similar to Y. alpella (Denis & Schiffermüller, 1775) and Y. lucella (Fabricius, 1775), based on clear differences in male and female genitalia and on DNA barcodes in Corley et al. (2019). Specimens were detected and captured by direct search of the environment during the day, with adults hand-netted and larvae reared to adulthood, and by night using mercury-vapor lamps to attract the insects. Captured specimens were identified to species level and preserved in 96% ethanol. A tissue sample, usually a leg, was collected from each individual, from which DNA was extracted. The DNA barcoding of these specimens was conducted within the InBIO Barcoding Initiative (IBI), funded by EnvMetaGen and PORBIOTA projects. DNA barcode sequences were deposited in BOLD (Barcode of Life Data System) and GenBank online databases. Preserved specimens and DNA extracts are deposited in the IBI collection at the CIBIO (Research Center in Biodiversity and Genetic Resources).
Записи данных
Данные этого occurrence ресурса были опубликованы в виде Darwin Core Archive (DwC-A), который является стандартным форматом для обмена данными о биоразнообразии в виде набора из одной или нескольких таблиц. Основная таблица данных содержит 8 записей.
Данный экземпляр IPT архивирует данные и таким образом служит хранилищем данных. Данные и метаданные ресурсов доступны для скачивания в разделе Загрузки. В таблице версий перечислены другие версии ресурса, которые были доступны публично, что позволяет отслеживать изменения, внесенные в ресурс с течением времени.
Версии
В таблице ниже указаны только опубликованные версии ресурса, которые доступны для свободного скачивания.
Как оформить ссылку
Исследователи должны дать ссылку на эту работу следующим образом:
Corley M, Ferreira S, Mata V A, Sousa P, Beja P (2020): The InBIO Barcoding Initiative Database: Ypsolopha rhinolophi sp. nov. (Lepidoptera: Ypsolophidae), a new species from Portugal and France unveiled by bats. v1.0. CIBIO (Research Center in Biodiversity and Genetic Resources) Portugal. Dataset/Occurrence. https://doi.org/10.15468/zbu2w8
Права
Исследователи должны соблюдать следующие права:
Публикующей организацией и владельцем прав на данную работу является CIBIO (Research Center in Biodiversity and Genetic Resources) Portugal. Эта работа находится под лицензией Creative Commons Attribution (CC-BY 4.0).
Регистрация в GBIF
Этот ресурс был зарегистрирован в GBIF, ему был присвоен следующий UUID: 9813ea12-db95-4695-8c7a-b001e2ac5a2c. CIBIO (Research Center in Biodiversity and Genetic Resources) Portugal отвечает за публикацию этого ресурса, и зарегистрирован в GBIF как издатель данных при оподдержке GBIF Portugal.
Ключевые слова
Lepidoptera; Species; Occurrence; Cytochrome c oxidase I (COI); DNA barcode; Continental Portugal; Occurrence
Контакты
- Metadata Provider ●
- Originator
http://orcid.org/0000-0003-4240-8007
- Metadata Provider ●
- Originator ●
- Point Of Contact
- Metadata Provider ●
- Originator
- Metadata Provider ●
- Originator
- Metadata Provider ●
- Originator ●
- Point Of Contact
Географический охват
Continental Portugal.
| Ограничивающие координаты | Юг Запад [41,631, -8,413], Север Восток [41,909, -6,274] |
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Таксономический охват
This dataset is composed of data relating to 8 Lepidoptera specimens. All specimens were determined to species level. All specimens belong to the genus Ypsolopha Latreille, 1796 and the family Ypsolophidae.
| Kingdom | Animalia |
|---|---|
| Phylum | Arthropoda |
| Class | Insecta |
| Order | Lepidoptera |
| Family | Ypsolophidae |
Временной охват
| Дата начала / Дата окончания | 2015-06-18 / 2017-07-21 |
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Данные проекта
The InBIO Barcoding Initiative aims to develop a reference collection of DNA barcoding sequences covering Portuguese invertebrate taxa. Within the project, a special focus is afforded to insects, given their relevance to food webs, ecosystems functioning, high diversity and limited number of DNA barcoding sequences of interest.
| Название | The InBIO Barcoding Initiative Database: Ypsolopha rhinolophi sp. nov. (Lepidoptera: Ypsolophidae), a new species from Portugal and France unveiled by bats |
|---|---|
| Идентификатор | InBIO Barcoding Initiative |
| Финансирование | InBIO Barcoding Initiative is funded by the European Union’s Horizon 2020 Research and Innovation programme under grant agreement No 668981, by the project PORBIOTA — Portuguese E-Infrastructure for Information and Research on Biodiversity (POCI-01-0145-FEDER-022127), supported by Operational Thematic Program for Competitiveness and Internationalization (POCI), under the PORTUGAL 2020 Partnership Agreement, through the European Regional Development Fund (FEDER) and by EDP Biodiversity Chair, and is part of research conducted at the Long Term Research Site of Baixo Sabor (LTER_EU_PT_002). |
| Описание района исследования | Specimens were collected in two districts of continental Portugal, in a total of seven different localities. Sampling was conducted from 2015 to 2017. |
| Описание плана выполнения исследований | Specimens in this dataset were collected in field work carried out between 2015 to 2017. Specimens were captured by direct search of the environment during the day, and using mercury-vapor lamps by night. |
Исполнители проекта:
Методы сбора
Sampling of specimens was done at seven different localities of continental Portugal. Sampling was conducted between 2015 to 2017. Captured specimens were preserved in 96% ethanol and stored at the InBIO Barcoding Initiative reference collection for downstream molecular analysis. The collected specimens were morphologically identified.
| Охват исследования | Specimens were collected in seven different localities of continental Portugal. Sampling was conducted from 2015 to 2017. |
|---|---|
| Контроль качества | The DNA barcoded specimen morphological identification was contrasted with the results of the Blast of the newly generated DNA barcode in BOLD Identification Engine. Prior submission to GBIF, data was checked for errors and inconsistencies with OpenRefine 3.3 (http://openrefine.org/). |
Описание этапа методики:
- Sampling of specimens was done at seven different localities of continental Portugal, between 2015 and 2017. Specimens were detected and captured by direct search during the day, with adults hand-netted and larvae reared to adulthood, and by night using mercury-vapor lamps as lures.
- The captured specimen was preserved in 96% ethanol.
- The specimen was morphologically identified using a binocular stereoscopic microscope and resorting to available literature (Clerck, 1759; Corley, Ferreira & Mata, 2019; Denis & Schiffermüller, 1775; Fabricius, 1775, 1787; Jin, Wang & Li, 2013; Linnaeus, 1761).
- DNA barcodes were sequenced from all specimens. For this, one leg was removed from each individual from which a 658 bp COI DNA barcode fragment was extracted, amplified and sequenced.
- The obtained sequences were submitted to BOLD and GenBank databases and the specimens’ morphological identification was contrasted with the results of the BLAST of the newly generated DNA barcode in BOLD Identification Engine.
- Prior submission to GBIF, data was checked for errors and inconsistencies with OpenRefine 3.3 (http://openrefine.org/).
Данные коллекции
| Название коллекции | InBIO Barcoding Initiative |
|---|---|
| Идентификатор коллекции | 4ec2b246-f5fa-4b90-9a8d-ddafc2a3f970 |
| Идентификатор родительской коллекции | CIBIO (Research Center in Biodiversity and Genetic Resources) Portugal |
| Методы сохранения образцов | Alcohol |
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| Единицы хранения | Между 1 и 8 Voucher tube , Между 1 и 8 DNA extractions |
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Библиографические ссылки
- Clerck, C.A. (1759) Icones insectorum rariorum cum nominibus eorum trivialibus locisque e C. Linnaei Systemae Naturae allegatis, Stockholm, 21 pp., 55 pls.
- Corley, M.F.V., Ferreira, S. & Mata, V.A. (2019). Ypsolopha rhinolophi sp. nov. (Lepidoptera: Ypsolophidae), a new species from Portugal and France unveiled by bats. Zootaxa, 4609(3): 565–573. https://doi.org/10.11646/zootaxa.4609.3.10
- Denis, M. & Schiffermüller, I. (1775) Ankündung eines systematischen Werkes von den Schmetterlingen der Wienergegend. Vienna, 324 pp.
- Fabricius, J.C. (1775) Systema Entomologicae, sistens Insectorum classes, ordines, genera, species, adjectis, synonymis, locis, descriptionibus, observationibus. Flensburg, Lipsia, 832 pp. https://doi.org/10.5962/bhl.title.36510
- Fabricius, J.C. (1787) Mantissa Insectorum sistens eorum species, nuper detectas adjectis characteribus generis, differentiis specificis emendationibus, observationibus. Vol. 2. Impensis Christ. Gottl. Proft, Hafniae, 382 pp. https://doi.org/10.5962/bhl.title.11657
- Jin, Q., Wang, S.X. & Li, H.H. (2013) Review of the genus Ypsolopha Latreille, 1796 from China. Zootaxa, 3705 (1), 1–91. https://doi.org/10.11646/zootaxa.3705.1.1
- Linnaeus, C. (1761) Fauna Svecica. 2nd Edition. Laurentii Salvii, Stockholm, 578 pp.
Дополнительные метаданные
| Цель | The InBIO Barcoding Initiative (IBI) aims to develop a reference collection of DNA barcoding sequences primarily covering Portuguese invertebrate taxa providing a tool in ecological studies. |
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| Альтернативные идентификаторы | 9813ea12-db95-4695-8c7a-b001e2ac5a2c |
| http://ipt.gbif.pt/ipt/resource?r=ibi_lepidoptera_ypsolopha_rhinolophi |