Descripción
The dataset contains one record of the species Borkhausenia crimnodes (Lepidoptera, Oecophoridae) collected in continental Portugal in 2014. This species, a southern hemisphere moth, had not been recorded in Europe before. The specimen was detected and captured by direct search of the environment and preserved in 96% ethanol. A tissue sample, one leg, was removed to be used for DNA extraction. Sequencing of the 658 bp COI DNA barcode was conducted within the InBIO Barcoding Initiative (IBI) and the DNA sequence was submitted to BOLD (Barcode of Life Data System) and GenBank databases. The preserved specimen and DNA extract are deposited in the IBI collection at the CIBIO (Research Center in Biodiversity and Genetic Resources).
Registros
Los datos en este recurso de registros biológicos han sido publicados como Archivo Darwin Core(DwC-A), el cual es un formato estándar para compartir datos de biodiversidad como un conjunto de una o más tablas de datos. La tabla de datos del core contiene 1 registros.
Este IPT archiva los datos y, por lo tanto, sirve como repositorio de datos. Los datos y los metadatos del recurso están disponibles para su descarga en la sección descargas. La tabla versiones enumera otras versiones del recurso que se han puesto a disposición del público y permite seguir los cambios realizados en el recurso a lo largo del tiempo.
Versiones
La siguiente tabla muestra sólo las versiones publicadas del recurso que son de acceso público.
¿Cómo referenciar?
Los usuarios deben citar este trabajo de la siguiente manera:
Corley M, Ferreira S, Lvovsky A L, Rosete J, Sousa P, Beja P (2020): The InBIO Barcoding Initiative Database: Borkhausenia crimnodes Meyrick, 1912 (Lepidoptera, Oecophoridae), a southern hemisphere species resident in Portugal. v1. CIBIO (Research Center in Biodiversity and Genetic Resources) Portugal. Dataset/Occurrence. https://doi.org/10.15468/8yge73
Derechos
Los usuarios deben respetar los siguientes derechos de uso:
El publicador y propietario de los derechos de este trabajo es CIBIO (Research Center in Biodiversity and Genetic Resources) Portugal. Esta obra está bajo una licencia Creative Commons de Atribución/Reconocimiento (CC-BY 4.0).
Registro GBIF
Este recurso ha sido registrado en GBIF con el siguiente UUID: 35fbe1f8-7afd-4892-ae73-086719c93a43. CIBIO (Research Center in Biodiversity and Genetic Resources) Portugal publica este recurso y está registrado en GBIF como un publicador de datos avalado por GBIF Portugal.
Palabras clave
Lepidoptera; Occurrence records; Species; Continental Portugal; DNA barcode; Cytochrome c oxidase I (COI); Southern hemisphere moth; Occurrence; Specimen
Contactos
- Proveedor De Los Metadatos ●
- Originador
http://orcid.org/0000-0003-4240-8007
- Proveedor De Los Metadatos ●
- Originador ●
- Punto De Contacto
- Proveedor De Los Metadatos ●
- Originador
- Proveedor De Los Metadatos ●
- Originador
- Proveedor De Los Metadatos
- Proveedor De Los Metadatos ●
- Originador ●
- Punto De Contacto
- Proveedor De Los Metadatos
Cobertura geográfica
Continental Portugal.
| Coordenadas límite | Latitud Mínima Longitud Mínima [39,933, -8,785], Latitud Máxima Longitud Máxima [40,037, -8,59] |
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Cobertura taxonómica
This dataset is composed of one specimen identified as Borkhausenia crimnodes (Lepidoptera, Oecophoridae), a moth species.
| Reino | Animalia |
|---|---|
| Filo | Arthropoda |
| Class | Insecta |
| Orden | Lepidoptera |
| Familia | Oecophoridae |
Cobertura temporal
| Fecha Inicial | 2014-09-14 |
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Datos del proyecto
The InBIO Barcoding Initiative aims to develop a reference collection of DNA barcoding sequences covering Portuguese taxa. Within the project, a special focus is afforded to insects, given their relevance to food webs, ecosystems functioning, high diversity and limited number of DNA barcoding sequences of interest.
| Título | The InBIO Barcoding Initiative Database: Borkhausenia crimnodes Meyrick, 1912 (Lepidoptera, Oecophoridae), a southern hemisphere species resident in Portugal |
|---|---|
| Identificador | InBIO Barcoding Initiative |
| Fuentes de Financiación | InBIO Barcoding Initiative is funded by the European Union’s Horizon 2020 Research and Innovation programme under grant agreement No 668981 and by the project PORBIOTA — Portuguese E-Infrastructure for Information and Research on Biodiversity (POCI-01-0145-FEDER-022127), supported by Operational Thematic Program for Competitiveness and Internationalization (POCI), under the PORTUGAL 2020 Partnership Agreement, through the European Regional Development Fund (FEDER). |
| Descripción del área de estudio | A single specimen was collected in Louriçal, Pombal, part of the Leiria District of Continental Portugal, in 2014. |
| Descripción del diseño | The specimen in this dataset was collected in a single locality in Continental Portugal. It was detected by direct search of the environment. |
Personas asociadas al proyecto:
Métodos de muestreo
The Borkhausenia crimnodes specimen was captured in continental Portugal in 2014, by direct search of the environment. The captured specimen was preserved in 96% ethanol and stored at the InBIO Barcoding Initiative reference collection for downstream molecular analysis. The collected specimen was morphologically identified.
| Área de Estudio | A single specimen was collected in Louriçal, in Continental Portugal, in 2014. |
|---|---|
| Control de Calidad | The DNA barcoded specimen morphological identification was contrasted with the results of the Blast of the newly generated DNA barcode in BOLD Identification Engine. Prior submission to GBIF, data was checked for errors and inconsistencies with OpenRefine 3.3 (http://openrefine.org/). |
Descripción de la metodología paso a paso:
- The Borkhausenia crimnodes specimen was captured in a single locality of continental Portugal, during 2014.
- The specimen was captured by direct search of the environment. The captured specimen was preserved in 96% ethanol.
- The specimen was morphologically identified using a binocular stereoscopic microscope and resorting to available literature (Meyrick, 1912).
- A DNA barcode was sequenced from a tissue sample, one leg, that was removed. DNA was then extracted, and a 658 bp COI DNA barcode fragment was amplified and sequenced.
- The obtained sequence was submitted to BOLD and GenBank databases and the specimen morphological identification was contrasted with the results of the BLAST of the newly generated DNA barcode in BOLD Identification Engine.
- Prior submission to GBIF, data was checked for errors and inconsistencies with OpenRefine 3.3 (http://openrefine.org/).
Datos de la colección
| Nombre de la Colección | InBIO Barcoding Initiative |
|---|---|
| Identificador de la Colección | 4ec2b246-f5fa-4b90-9a8d-ddafc2a3f970 |
| Métodos de preservación de los ejemplares | Alcohol |
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| Unidades curatoriales | Entre 1 y 1 Voucher tube , Entre 1 y 1 DNA extractions |
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Referencias bibliográficas
- Corley, M.F.V., Ferreira, S., Lvovsky, A.L. & Rosete, J. (2017). Borkhausenia crimnodes Meyrick, 1912 (Lepidoptera, Oecophoridae), a southern hemisphere species resident in Portugal. Nota Lepidopterologica, 40(1): 15–24. https://doi.org/10.3897/nl.40.10938
- Meyrick, E. (1912). Descriptions of South American Micro-Lepidoptera. Transactions of the Entomological Society of London 1911: 673–718. https://doi.org/10.1111/j.1365-2311.1912.tb02203.x
Metadatos adicionales
| Propósito | The InBIO Barcoding Initiative (IBI) aims to develop a reference collection of DNA barcoding sequences primarily covering Portuguese invertebrate taxa providing a tool in ecological studies. |
|---|---|
| Identificadores alternativos | 35fbe1f8-7afd-4892-ae73-086719c93a43 |
| http://ipt.gbif.pt/ipt/resource?r=ibi_lepidoptera_borkhausenia |