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The InBIO Barcoding Initiative Database: Borkhausenia crimnodes Meyrick, 1912 (Lepidoptera, Oecophoridae), a southern hemisphere species resident in Portugal

Latest version published by CIBIO (Research Center in Biodiversity and Genetic Resources) Portugal on Sep 10, 2020 CIBIO (Research Center in Biodiversity and Genetic Resources) Portugal

The dataset contains one record of the species Borkhausenia crimnodes (Lepidoptera, Oecophoridae) collected in continental Portugal in 2014. This species, a southern hemisphere moth, had not been recorded in Europe before. The specimen was detected and captured by direct search of the environment and preserved in 96% ethanol. A tissue sample, one leg, was removed to be used for DNA extraction. Sequencing of the 658 bp COI DNA barcode was conducted within the InBIO Barcoding Initiative (IBI) and the DNA sequence was submitted to BOLD (Barcode of Life Data System) and GenBank databases. The preserved specimen and DNA extract are deposited in the IBI collection at the CIBIO (Research Center in Biodiversity and Genetic Resources).

Data Records

The data in this occurrence resource has been published as a Darwin Core Archive (DwC-A), which is a standardized format for sharing biodiversity data as a set of one or more data tables. The core data table contains 1 records.

This IPT archives the data and thus serves as the data repository. The data and resource metadata are available for download in the downloads section. The versions table lists other versions of the resource that have been made publicly available and allows tracking changes made to the resource over time.

Downloads

Download the latest version of this resource data as a Darwin Core Archive (DwC-A) or the resource metadata as EML or RTF:

Data as a DwC-A file download 1 records in English (7 KB) - Update frequency: as needed
Metadata as an EML file download in English (24 KB)
Metadata as an RTF file download in English (16 KB)

Versions

The table below shows only published versions of the resource that are publicly accessible.

How to cite

Researchers should cite this work as follows:

Corley M, Ferreira S, Lvovsky A L, Rosete J, Sousa P, Beja P (2020): The InBIO Barcoding Initiative Database: Borkhausenia crimnodes Meyrick, 1912 (Lepidoptera, Oecophoridae), a southern hemisphere species resident in Portugal. v1. CIBIO (Research Center in Biodiversity and Genetic Resources) Portugal. Dataset/Occurrence. https://doi.org/10.15468/8yge73

Rights

Researchers should respect the following rights statement:

The publisher and rights holder of this work is CIBIO (Research Center in Biodiversity and Genetic Resources) Portugal. This work is licensed under a Creative Commons Attribution (CC-BY) 4.0 License.

GBIF Registration

This resource has been registered with GBIF, and assigned the following GBIF UUID: 35fbe1f8-7afd-4892-ae73-086719c93a43.  CIBIO (Research Center in Biodiversity and Genetic Resources) Portugal publishes this resource, and is itself registered in GBIF as a data publisher endorsed by GBIF Portugal.

Keywords

Lepidoptera; Occurrence records; Species; Continental Portugal; DNA barcode; Cytochrome c oxidase I (COI); Southern hemisphere moth; Occurrence; Specimen

Contacts

Who created the resource:

Martin Corley
Researcher
Pucketty Farm Cottage SN7 8JP Faringdon Oxfordshire GB
Sónia Ferreira
Post-Doc Researcher
CIBIO-InBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, Universidade do Porto Campus Agrário de Vairão, Rua Padre Armando Quintas, nº 7 4485-661 Vairão Porto PT +351 252660411
Alexander L. Lvovsky
Senior Researcher
Zoological Institute, Russian Academy of Sciences 1 Universitetskaya Emb. Saint Petersburg Saint Petersburg RU
Jorge Rosete
Researcher
Urbanização Lourisol, Rua Manuel Cerqueira Nobrega 3105-165 Louriçal, Pombal Leiria PT
Pedro Sousa
Post-Doc Researcher
CIBIO-InBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, Universidade do Porto Campus Agrário de Vairão, R. Padre Armando Quintas, 7 4485-661 Vairão Porto PT +351 252660411
Pedro Beja
Coordinating Researcher
CIBIO-InBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, Universidade do Porto Campus Agrário de Vairão, R. Padre Armando Quintas, 7 4485-661 Vairão Porto PT +351 252660411

Who can answer questions about the resource:

Pedro Beja
Coordinating Researcher
CIBIO-InBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, Universidade do Porto Campus Agrário de Vairão, R. Padre Armando Quintas, 7 4485-661 Vairão Porto PT +351 252660411
Sónia Ferreira
Post-Doc Researcher
CIBIO-InBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, Universidade do Porto Campus Agrário de Vairão, Rua Padre Armando Quintas, nº 7 4485-661 Vairão Porto PT +351 252660411

Who filled in the metadata:

Martin Corley
Researcher
Pucketty Farm Cottage SN7 8JP Faringdon Oxfordshire GB
Sónia Ferreira
Post-Doc Researcher
CIBIO-InBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, Universidade do Porto Campus Agrário de Vairão, Rua Padre Armando Quintas, nº 7 4485-661 Vairão Porto PT +351 252660411
Alexander L. Lvovsky
Senior Researcher
Zoological Institute, Russian Academy of Sciences 1 Universitetskaya Emb. Saint Petersburg Saint Petersburg RU
Jorge Rosete
Researcher
Urbanização Lourisol, Rua Manuel Cerqueira Nobrega 3105-165 Louriçal, Pombal Leiria PT
Pedro Sousa
Post-Doc Researcher
CIBIO-InBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, Universidade do Porto Campus Agrário de Vairão, R. Padre Armando Quintas, 7 4485-661 Vairão Porto PT +351 252660411
Pedro Beja
Coordinating Researcher
CIBIO-InBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, Universidade do Porto Campus Agrário de Vairão, R. Padre Armando Quintas, 7 4485-661 Vairão Porto PT +351 252660411

Geographic Coverage

Continental Portugal.

Bounding Coordinates South West [39.933, -8.785], North East [40.037, -8.59]

Taxonomic Coverage

This dataset is composed of one specimen identified as Borkhausenia crimnodes (Lepidoptera, Oecophoridae), a moth species.

Kingdom  Animalia
Phylum  Arthropoda
Class  Insecta
Order  Lepidoptera
Family  Oecophoridae

Temporal Coverage

Start Date 2014-09-14

Project Data

The InBIO Barcoding Initiative aims to develop a reference collection of DNA barcoding sequences covering Portuguese taxa. Within the project, a special focus is afforded to insects, given their relevance to food webs, ecosystems functioning, high diversity and limited number of DNA barcoding sequences of interest.

Title The InBIO Barcoding Initiative Database: Borkhausenia crimnodes Meyrick, 1912 (Lepidoptera, Oecophoridae), a southern hemisphere species resident in Portugal
Identifier InBIO Barcoding Initiative
Funding InBIO Barcoding Initiative is funded by the European Union’s Horizon 2020 Research and Innovation programme under grant agreement No 668981 and by the project PORBIOTA — Portuguese E-Infrastructure for Information and Research on Biodiversity (POCI-01-0145-FEDER-022127), supported by Operational Thematic Program for Competitiveness and Internationalization (POCI), under the PORTUGAL 2020 Partnership Agreement, through the European Regional Development Fund (FEDER).
Study Area Description A single specimen was collected in Louriçal, Pombal, part of the Leiria District of Continental Portugal, in 2014.
Design Description The specimen in this dataset was collected in a single locality in Continental Portugal. It was detected by direct search of the environment.

The personnel involved in the project:

Sampling Methods

The Borkhausenia crimnodes specimen was captured in continental Portugal in 2014, by direct search of the environment. The captured specimen was preserved in 96% ethanol and stored at the InBIO Barcoding Initiative reference collection for downstream molecular analysis. The collected specimen was morphologically identified.

Study Extent A single specimen was collected in Louriçal, in Continental Portugal, in 2014.
Quality Control The DNA barcoded specimen morphological identification was contrasted with the results of the Blast of the newly generated DNA barcode in BOLD Identification Engine. Prior submission to GBIF, data was checked for errors and inconsistencies with OpenRefine 3.3 (http://openrefine.org/).

Method step description:

  1. The Borkhausenia crimnodes specimen was captured in a single locality of continental Portugal, during 2014.
  2. The specimen was captured by direct search of the environment. The captured specimen was preserved in 96% ethanol.
  3. The specimen was morphologically identified using a binocular stereoscopic microscope and resorting to available literature (Meyrick, 1912).
  4. A DNA barcode was sequenced from a tissue sample, one leg, that was removed. DNA was then extracted, and a 658 bp COI DNA barcode fragment was amplified and sequenced.
  5. The obtained sequence was submitted to BOLD and GenBank databases and the specimen morphological identification was contrasted with the results of the BLAST of the newly generated DNA barcode in BOLD Identification Engine.
  6. Prior submission to GBIF, data was checked for errors and inconsistencies with OpenRefine 3.3 (http://openrefine.org/).

Collection Data

Collection Name InBIO Barcoding Initiative
Collection Identifier 4ec2b246-f5fa-4b90-9a8d-ddafc2a3f970
Specimen preservation methods Alcohol
Curatorial Units Between 1 and 1 Voucher tube ,  Between 1 and 1 DNA extractions

Bibliographic Citations

  1. Corley, M.F.V., Ferreira, S., Lvovsky, A.L. & Rosete, J. (2017). Borkhausenia crimnodes Meyrick, 1912 (Lepidoptera, Oecophoridae), a southern hemisphere species resident in Portugal. Nota Lepidopterologica, 40(1): 15–24. https://doi.org/10.3897/nl.40.10938
  2. Meyrick, E. (1912). Descriptions of South American Micro-Lepidoptera. Transactions of the Entomological Society of London 1911: 673–718. https://doi.org/10.1111/j.1365-2311.1912.tb02203.x

Additional Metadata

Purpose The InBIO Barcoding Initiative (IBI) aims to develop a reference collection of DNA barcoding sequences primarily covering Portuguese invertebrate taxa providing a tool in ecological studies.
Alternative Identifiers 35fbe1f8-7afd-4892-ae73-086719c93a43
http://ipt.gbif.pt/ipt/resource?r=ibi_lepidoptera_borkhausenia