Description
The dataset contains one record of the species Borkhausenia crimnodes (Lepidoptera, Oecophoridae) collected in continental Portugal in 2014. This species, a southern hemisphere moth, had not been recorded in Europe before. The specimen was detected and captured by direct search of the environment and preserved in 96% ethanol. A tissue sample, one leg, was removed to be used for DNA extraction. Sequencing of the 658 bp COI DNA barcode was conducted within the InBIO Barcoding Initiative (IBI) and the DNA sequence was submitted to BOLD (Barcode of Life Data System) and GenBank databases. The preserved specimen and DNA extract are deposited in the IBI collection at the CIBIO (Research Center in Biodiversity and Genetic Resources).
Data Records
The data in this occurrence resource has been published as a Darwin Core Archive (DwC-A), which is a standardized format for sharing biodiversity data as a set of one or more data tables. The core data table contains 1 records.
This IPT archives the data and thus serves as the data repository. The data and resource metadata are available for download in the downloads section. The versions table lists other versions of the resource that have been made publicly available and allows tracking changes made to the resource over time.
Versions
The table below shows only published versions of the resource that are publicly accessible.
How to cite
Researchers should cite this work as follows:
Corley M, Ferreira S, Lvovsky A L, Rosete J, Sousa P, Beja P (2020): The InBIO Barcoding Initiative Database: Borkhausenia crimnodes Meyrick, 1912 (Lepidoptera, Oecophoridae), a southern hemisphere species resident in Portugal. v1. CIBIO (Research Center in Biodiversity and Genetic Resources) Portugal. Dataset/Occurrence. https://doi.org/10.15468/8yge73
Rights
Researchers should respect the following rights statement:
The publisher and rights holder of this work is CIBIO (Research Center in Biodiversity and Genetic Resources) Portugal. This work is licensed under a Creative Commons Attribution (CC-BY 4.0) License.
GBIF Registration
This resource has been registered with GBIF, and assigned the following GBIF UUID: 35fbe1f8-7afd-4892-ae73-086719c93a43. CIBIO (Research Center in Biodiversity and Genetic Resources) Portugal publishes this resource, and is itself registered in GBIF as a data publisher endorsed by GBIF Portugal.
Keywords
Lepidoptera; Occurrence records; Species; Continental Portugal; DNA barcode; Cytochrome c oxidase I (COI); Southern hemisphere moth; Occurrence; Specimen
Contacts
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http://orcid.org/0000-0003-4240-8007
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- Point Of Contact
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Geographic Coverage
Continental Portugal.
| Bounding Coordinates | South West [39.933, -8.785], North East [40.037, -8.59] |
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Taxonomic Coverage
This dataset is composed of one specimen identified as Borkhausenia crimnodes (Lepidoptera, Oecophoridae), a moth species.
| Kingdom | Animalia |
|---|---|
| Phylum | Arthropoda |
| Class | Insecta |
| Order | Lepidoptera |
| Family | Oecophoridae |
Temporal Coverage
| Start Date | 2014-09-14 |
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Project Data
The InBIO Barcoding Initiative aims to develop a reference collection of DNA barcoding sequences covering Portuguese taxa. Within the project, a special focus is afforded to insects, given their relevance to food webs, ecosystems functioning, high diversity and limited number of DNA barcoding sequences of interest.
| Title | The InBIO Barcoding Initiative Database: Borkhausenia crimnodes Meyrick, 1912 (Lepidoptera, Oecophoridae), a southern hemisphere species resident in Portugal |
|---|---|
| Identifier | InBIO Barcoding Initiative |
| Funding | InBIO Barcoding Initiative is funded by the European Union’s Horizon 2020 Research and Innovation programme under grant agreement No 668981 and by the project PORBIOTA — Portuguese E-Infrastructure for Information and Research on Biodiversity (POCI-01-0145-FEDER-022127), supported by Operational Thematic Program for Competitiveness and Internationalization (POCI), under the PORTUGAL 2020 Partnership Agreement, through the European Regional Development Fund (FEDER). |
| Study Area Description | A single specimen was collected in Louriçal, Pombal, part of the Leiria District of Continental Portugal, in 2014. |
| Design Description | The specimen in this dataset was collected in a single locality in Continental Portugal. It was detected by direct search of the environment. |
The personnel involved in the project:
Sampling Methods
The Borkhausenia crimnodes specimen was captured in continental Portugal in 2014, by direct search of the environment. The captured specimen was preserved in 96% ethanol and stored at the InBIO Barcoding Initiative reference collection for downstream molecular analysis. The collected specimen was morphologically identified.
| Study Extent | A single specimen was collected in Louriçal, in Continental Portugal, in 2014. |
|---|---|
| Quality Control | The DNA barcoded specimen morphological identification was contrasted with the results of the Blast of the newly generated DNA barcode in BOLD Identification Engine. Prior submission to GBIF, data was checked for errors and inconsistencies with OpenRefine 3.3 (http://openrefine.org/). |
Method step description:
- The Borkhausenia crimnodes specimen was captured in a single locality of continental Portugal, during 2014.
- The specimen was captured by direct search of the environment. The captured specimen was preserved in 96% ethanol.
- The specimen was morphologically identified using a binocular stereoscopic microscope and resorting to available literature (Meyrick, 1912).
- A DNA barcode was sequenced from a tissue sample, one leg, that was removed. DNA was then extracted, and a 658 bp COI DNA barcode fragment was amplified and sequenced.
- The obtained sequence was submitted to BOLD and GenBank databases and the specimen morphological identification was contrasted with the results of the BLAST of the newly generated DNA barcode in BOLD Identification Engine.
- Prior submission to GBIF, data was checked for errors and inconsistencies with OpenRefine 3.3 (http://openrefine.org/).
Collection Data
| Collection Name | InBIO Barcoding Initiative |
|---|---|
| Collection Identifier | 4ec2b246-f5fa-4b90-9a8d-ddafc2a3f970 |
| Specimen preservation methods | Alcohol |
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| Curatorial Units | Between 1 and 1 Voucher tube , Between 1 and 1 DNA extractions |
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Bibliographic Citations
- Corley, M.F.V., Ferreira, S., Lvovsky, A.L. & Rosete, J. (2017). Borkhausenia crimnodes Meyrick, 1912 (Lepidoptera, Oecophoridae), a southern hemisphere species resident in Portugal. Nota Lepidopterologica, 40(1): 15–24. https://doi.org/10.3897/nl.40.10938
- Meyrick, E. (1912). Descriptions of South American Micro-Lepidoptera. Transactions of the Entomological Society of London 1911: 673–718. https://doi.org/10.1111/j.1365-2311.1912.tb02203.x
Additional Metadata
| Purpose | The InBIO Barcoding Initiative (IBI) aims to develop a reference collection of DNA barcoding sequences primarily covering Portuguese invertebrate taxa providing a tool in ecological studies. |
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| Alternative Identifiers | 35fbe1f8-7afd-4892-ae73-086719c93a43 |
| http://ipt.gbif.pt/ipt/resource?r=ibi_lepidoptera_borkhausenia |