Description
The dataset contains one record of the species Borkhausenia crimnodes (Lepidoptera, Oecophoridae) collected in continental Portugal in 2014. This species, a southern hemisphere moth, had not been recorded in Europe before. The specimen was detected and captured by direct search of the environment and preserved in 96% ethanol. A tissue sample, one leg, was removed to be used for DNA extraction. Sequencing of the 658 bp COI DNA barcode was conducted within the InBIO Barcoding Initiative (IBI) and the DNA sequence was submitted to BOLD (Barcode of Life Data System) and GenBank databases. The preserved specimen and DNA extract are deposited in the IBI collection at the CIBIO (Research Center in Biodiversity and Genetic Resources).
Enregistrements de données
Les données de cette ressource occurrence ont été publiées sous forme d'une Archive Darwin Core (Darwin Core Archive ou DwC-A), le format standard pour partager des données de biodiversité en tant qu'ensemble d'un ou plusieurs tableurs de données. Le tableur de données du cœur de standard (core) contient 1 enregistrements.
Cet IPT archive les données et sert donc de dépôt de données. Les données et métadonnées de la ressource sont disponibles pour téléchargement dans la section téléchargements. Le tableau des versions liste les autres versions de chaque ressource rendues disponibles de façon publique et permet de tracer les modifications apportées à la ressource au fil du temps.
Versions
Le tableau ci-dessous n'affiche que les versions publiées de la ressource accessibles publiquement.
Comment citer
Les chercheurs doivent citer cette ressource comme suit:
Corley M, Ferreira S, Lvovsky A L, Rosete J, Sousa P, Beja P (2020): The InBIO Barcoding Initiative Database: Borkhausenia crimnodes Meyrick, 1912 (Lepidoptera, Oecophoridae), a southern hemisphere species resident in Portugal. v1. CIBIO (Research Center in Biodiversity and Genetic Resources) Portugal. Dataset/Occurrence. https://doi.org/10.15468/8yge73
Droits
Les chercheurs doivent respecter la déclaration de droits suivante:
L’éditeur et détenteur des droits de cette ressource est CIBIO (Research Center in Biodiversity and Genetic Resources) Portugal. Ce travail est sous licence Creative Commons Attribution (CC-BY) 4.0.
Enregistrement GBIF
Cette ressource a été enregistrée sur le portail GBIF, et possède l'UUID GBIF suivante : 35fbe1f8-7afd-4892-ae73-086719c93a43. CIBIO (Research Center in Biodiversity and Genetic Resources) Portugal publie cette ressource, et est enregistré dans le GBIF comme éditeur de données avec l'approbation du GBIF Portugal.
Mots-clé
Lepidoptera; Occurrence records; Species; Continental Portugal; DNA barcode; Cytochrome c oxidase I (COI); Southern hemisphere moth; Occurrence; Specimen
Contacts
- Fournisseur Des Métadonnées ●
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http://orcid.org/0000-0003-4240-8007
- Fournisseur Des Métadonnées ●
- Créateur ●
- Personne De Contact
- Fournisseur Des Métadonnées ●
- Créateur
- Fournisseur Des Métadonnées ●
- Créateur
- Fournisseur Des Métadonnées
- Fournisseur Des Métadonnées ●
- Créateur ●
- Personne De Contact
- Fournisseur Des Métadonnées
Couverture géographique
Continental Portugal.
| Enveloppe géographique | Sud Ouest [39,933, -8,785], Nord Est [40,037, -8,59] |
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Couverture taxonomique
This dataset is composed of one specimen identified as Borkhausenia crimnodes (Lepidoptera, Oecophoridae), a moth species.
| Kingdom | Animalia |
|---|---|
| Phylum | Arthropoda |
| Class | Insecta |
| Order | Lepidoptera |
| Family | Oecophoridae |
Couverture temporelle
| Date de début | 2014-09-14 |
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Données sur le projet
The InBIO Barcoding Initiative aims to develop a reference collection of DNA barcoding sequences covering Portuguese taxa. Within the project, a special focus is afforded to insects, given their relevance to food webs, ecosystems functioning, high diversity and limited number of DNA barcoding sequences of interest.
| Titre | The InBIO Barcoding Initiative Database: Borkhausenia crimnodes Meyrick, 1912 (Lepidoptera, Oecophoridae), a southern hemisphere species resident in Portugal |
|---|---|
| Identifiant | InBIO Barcoding Initiative |
| Financement | InBIO Barcoding Initiative is funded by the European Union’s Horizon 2020 Research and Innovation programme under grant agreement No 668981 and by the project PORBIOTA — Portuguese E-Infrastructure for Information and Research on Biodiversity (POCI-01-0145-FEDER-022127), supported by Operational Thematic Program for Competitiveness and Internationalization (POCI), under the PORTUGAL 2020 Partnership Agreement, through the European Regional Development Fund (FEDER). |
| Description du domaine d'étude / de recherche | A single specimen was collected in Louriçal, Pombal, part of the Leiria District of Continental Portugal, in 2014. |
| Description du design | The specimen in this dataset was collected in a single locality in Continental Portugal. It was detected by direct search of the environment. |
Les personnes impliquées dans le projet:
Méthodes d'échantillonnage
The Borkhausenia crimnodes specimen was captured in continental Portugal in 2014, by direct search of the environment. The captured specimen was preserved in 96% ethanol and stored at the InBIO Barcoding Initiative reference collection for downstream molecular analysis. The collected specimen was morphologically identified.
| Etendue de l'étude | A single specimen was collected in Louriçal, in Continental Portugal, in 2014. |
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| Contrôle qualité | The DNA barcoded specimen morphological identification was contrasted with the results of the Blast of the newly generated DNA barcode in BOLD Identification Engine. Prior submission to GBIF, data was checked for errors and inconsistencies with OpenRefine 3.3 (http://openrefine.org/). |
Description des étapes de la méthode:
- The Borkhausenia crimnodes specimen was captured in a single locality of continental Portugal, during 2014.
- The specimen was captured by direct search of the environment. The captured specimen was preserved in 96% ethanol.
- The specimen was morphologically identified using a binocular stereoscopic microscope and resorting to available literature (Meyrick, 1912).
- A DNA barcode was sequenced from a tissue sample, one leg, that was removed. DNA was then extracted, and a 658 bp COI DNA barcode fragment was amplified and sequenced.
- The obtained sequence was submitted to BOLD and GenBank databases and the specimen morphological identification was contrasted with the results of the BLAST of the newly generated DNA barcode in BOLD Identification Engine.
- Prior submission to GBIF, data was checked for errors and inconsistencies with OpenRefine 3.3 (http://openrefine.org/).
Données de collection
| Nom de la collection | InBIO Barcoding Initiative |
|---|---|
| Identifiant de collection | 4ec2b246-f5fa-4b90-9a8d-ddafc2a3f970 |
| Méthode de conservation des spécimens | Alcohol |
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| Unités de conservation | Entre (nombre minimal) 1 et (nombre maximal) 1 Voucher tube , Entre (nombre minimal) 1 et (nombre maximal) 1 DNA extractions |
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Citations bibliographiques
- Corley, M.F.V., Ferreira, S., Lvovsky, A.L. & Rosete, J. (2017). Borkhausenia crimnodes Meyrick, 1912 (Lepidoptera, Oecophoridae), a southern hemisphere species resident in Portugal. Nota Lepidopterologica, 40(1): 15–24. https://doi.org/10.3897/nl.40.10938
- Meyrick, E. (1912). Descriptions of South American Micro-Lepidoptera. Transactions of the Entomological Society of London 1911: 673–718. https://doi.org/10.1111/j.1365-2311.1912.tb02203.x
Métadonnées additionnelles
| Objet | The InBIO Barcoding Initiative (IBI) aims to develop a reference collection of DNA barcoding sequences primarily covering Portuguese invertebrate taxa providing a tool in ecological studies. |
|---|---|
| Identifiants alternatifs | 35fbe1f8-7afd-4892-ae73-086719c93a43 |
| http://ipt.gbif.pt/ipt/resource?r=ibi_lepidoptera_borkhausenia |