Occurrence

The InBIO Barcoding Initiative Database: Portuguese Stag beetles (Coleoptera, Lucanidae)

Dernière version Publié par CIBIO (Research Center in Biodiversity and Genetic Resources) Portugal le 11 novembre 2021 CIBIO (Research Center in Biodiversity and Genetic Resources) Portugal

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Description

The dataset contains 11 records of Stag beetle (Lucanidae) species collected from 2015 to 2019 in continental Portugal. All specimens were identified to species level, and belong to 3 species of the Lucanidae (Coleoptera). Specimens were detected during fieldwork by direct search and stored in 96% ethanol. A tissue sample (a leg), was collected from each individual, from which DNA was extracted. The DNA barcoding of these specimens was conducted within the InBIO Barcoding Initiative (IBI), funded by EnvMetaGen and PORBIOTA projects. DNA barcode sequences available were deposited in BOLD (Barcode of Life Data System) online database. Preserved specimens and DNA extracts are deposited in the IBI collection at the CIBIO (Research Center in Biodiversity and Genetic Resources).

Enregistrements de données

Les données de cette ressource occurrence ont été publiées sous forme d'une Archive Darwin Core (Darwin Core Archive ou DwC-A), le format standard pour partager des données de biodiversité en tant qu'ensemble d'un ou plusieurs tableurs de données. Le tableur de données du cœur de standard (core) contient 11 enregistrements.

Cet IPT archive les données et sert donc de dépôt de données. Les données et métadonnées de la ressource sont disponibles pour téléchargement dans la section téléchargements. Le tableau des versions liste les autres versions de chaque ressource rendues disponibles de façon publique et permet de tracer les modifications apportées à la ressource au fil du temps.

Versions

Le tableau ci-dessous n'affiche que les versions publiées de la ressource accessibles publiquement.

Comment citer

Les chercheurs doivent citer cette ressource comme suit:

Ferreira S, P. da Silva L, Sousa P, Beja P (2020). The InBIO Barcoding Initiative Database: Portuguese Stag beetles (Coleoptera, Lucanidae). v1.2. CIBIO (Research Center in Biodiversity and Genetic Resources) Portugal. Occurrence dataset. https://doi.org/10.15468/7559ru

Droits

Les chercheurs doivent respecter la déclaration de droits suivante:

L’éditeur et détenteur des droits de cette ressource est CIBIO (Research Center in Biodiversity and Genetic Resources) Portugal. Ce travail est sous licence Creative Commons Attribution (CC-BY) 4.0.

Enregistrement GBIF

Cette ressource a été enregistrée sur le portail GBIF, et possède l'UUID GBIF suivante : f1f1225f-4247-43a3-83de-7fbd2dca7e92.  CIBIO (Research Center in Biodiversity and Genetic Resources) Portugal publie cette ressource, et est enregistré dans le GBIF comme éditeur de données avec l'approbation du GBIF Portugal.

Mots-clé

Coleoptera; Lucanidae; Species; Cytochrome c oxidase I (COI); DNA barcode; Continental Portugal; Occurrence; Specimen; Occurrence

Contacts

Sónia Ferreira
  • Fournisseur Des Métadonnées
  • Créateur
  • Personne De Contact
Post-Doc Researcher
CIBIO-InBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, Universidade do Porto
Campus Agrário de Vairão, Rua Padre Armando Quintas, nº 7
4485-661 Vairão
Porto
PT
+351 252660411
Luís P. da Silva
  • Fournisseur Des Métadonnées
  • Créateur
Post-Doc Researcher
CIBIO-InBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, Universidade do Porto
Campus Agrário de Vairão, Rua Padre Armando Quintas, nº 7
4485-661 Vairão
Porto
PT
+351 252660411
Pedro Sousa
  • Fournisseur Des Métadonnées
  • Créateur
Post-Doc Researcher
CIBIO-InBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, Universidade do Porto
Campus Agrário de Vairão, Rua Padre Armando Quintas, nº 7
4485-661 Vairão
Porto
PT
+351 252660411
Pedro Beja
  • Fournisseur Des Métadonnées
  • Créateur
  • Personne De Contact
Coordinating Researcher
CIBIO-InBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, Universidade do Porto
Campus Agrário de Vairão, Rua Padre Armando Quintas, nº 7
4485-661 Vairão
Porto
PT
+351 252660411

Couverture géographique

Continental Portugal

Enveloppe géographique Sud Ouest [37, -9], Nord Est [41,9, -6,7]

Couverture taxonomique

This dataset is composed of data relating to 11 Lucanidae (Coleoptera) specimens. All specimens were determined to species level. Three of the four Stag beetle species known to occur in continental Portugal are represented in the dataset, with Dorcus parallelipipedus as the most represented species in the dataset, accounting for seven of the eleven specimens.

Kingdom Animalia
Phylum Arthropoda
Class Insecta
Order Coleoptera
Family Lucanidae

Couverture temporelle

Date de début / Date de fin 2015-06-17 / 2019-09-19

Données sur le projet

The InBIO Barcoding Initiative aims to develop a reference collection of DNA barcoding sequences covering Portuguese invertebrate taxa. Within the project, a special focus is afforded to insects, given their relevance to food webs, ecosystems functioning, high diversity and limited number of DNA barcoding sequences of interest.

Titre The InBIO Barcoding Initiative Database: Portuguese Stag beetles (Coleoptera, Lucanidae)
Identifiant InBIO Barcoding Initiative
Financement InBIO Barcoding Initiative is funded by the European Union’s Horizon 2020 Research and Innovation programme under grant agreement No 668981 and by the project PORBIOTA — Portuguese E-Infrastructure for Information and Research on Biodiversity (POCI-01-0145-FEDER-022127), supported by Operational Thematic Program for Competitiveness and Internationalization (POCI), under the PORTUGAL 2020 Partnership Agreement, through the European Regional Development Fund (FEDER). The fieldwork benefited from EDP Biodiversity Chair, the project “Promoção dos serviços de ecossistemas no Parque Natural Regional do Vale do Tua: Controlo de Pragas Agrícolas e Florestais por Morcegos” funded by the Agência de Desenvolvimento Regional do Vale do Tua, the FCT project PTDC/ASP-SIL/30250/2017 - POCI-01-0145-FEDER-030250 and includes research conducted at the Long Term Research Site of Baixo Sabor (LTER_EU_PT_002).
Description du domaine d'étude / de recherche Specimens were collected in five Portugal districts and a total of ten sites were sampled. Sampling was conducted from 2015 to 2019.
Description du design Specimens in this dataset were collected in field work carried out between 2015 and 2019. Specimens were located by direct searches carried out during field work, which enabled the sampling of both live and dead specimens.

Les personnes impliquées dans le projet:

Méthodes d'échantillonnage

Specimens were collected in ten localities of continental Portugal. Sampling was conducted between 2015 and 2019, by direct search. Collected specimens were identified using a binocular stereoscopic microscope and stored in 96% ethanol for downstream molecular analysis.

Etendue de l'étude Specimens were collected in ten localities of continental Portugal. Sampling was conducted from 2015 to 2019, in several field work expeditions.
Contrôle qualité To each specimen the morphological identification was contrasted with the results of the Blast of the newly generated DNA barcodes in BOLD Identification Engine.

Description des étapes de la méthode:

  1. Sampling was conducted in continental Portugal from 2015 and 2019, and consisted in direct search. Specimens collected were stored in 96% ethanol. A tissue sample (leg) was removed from which DNA was extracted and the COI DNA barcode fragment was sequenced. Prior submission to GBIF, data was checked for errors and inconsistencies with OpenRefine 3.2 (http://openrefine.org/).

Données de collection

Nom de la collection InBIO Barcoding Initiative
Identifiant de collection 4ec2b246-f5fa-4b90-9a8d-ddafc2a3f970
Identifiant de la collection parente CIBIO (Research Center in Biodiversity and Genetic Resources) Portugal
Méthode de conservation des spécimens Alcohol
Unités de conservation Entre (nombre minimal) 1 et (nombre maximal) 11 Voucher tube ,  Entre (nombre minimal) 1 et (nombre maximal) 11 DNA extractions

Métadonnées additionnelles

Objet The InBIO Barcoding Initiative (IBI) aims to develop a reference collection of DNA barcoding sequences primarily covering Portuguese invertebrate taxa providing a tool in ecological studies.
Identifiants alternatifs f1f1225f-4247-43a3-83de-7fbd2dca7e92
http://ipt.gbif.pt/ipt/resource?r=ibi_lucanidae