The InBIO Barcoding Initiative Database: Depressaria infernella Corley & Buchner, a new Iberian species of the Depressaria douglasella group

Событие
Последняя версия опубликовано CIBIO (Research Center in Biodiversity and Genetic Resources) Portugal янв. 5, 2021 CIBIO (Research Center in Biodiversity and Genetic Resources) Portugal
Домой:
http://www.boldsystems.org/index.php/Public_SearchTerms?query=DS-IBILP3
Дата публикации:
5 января 2021 г.
Лицензия:
CC-BY 4.0

Скачайте последнюю версию данных этого ресурса в формате Darwin Core Archive (DwC-A) или метаданных ресурса в форматах EML или RTF:

Данные в формате DwC-A Скачать 2 Записи в English (7 KB) - Частота обновления: по мере необходимости
Метаданные в формате EML Скачать в English (23 KB)
Метаданные в формате RTF Скачать в English (17 KB)

Описание

The dataset contains two records of moth specimens (Lepidoptera, Depressariidae) collected in 2011 and 2015 in continental Portugal. The study of these specimens resulted in the description of a new Portuguese endemic species, Depressaria infernella Corley & Buchner, 2019 based on differences found in the male and female genitalia and DNA barcodes in Corley et al. (2019). Specimens were detected and captured using a mercury-vapor lamp to attract the insects. Captured specimens were identified to species level and preserved in 96% ethanol or in dry storage. From each specimen a tissue sample, one leg, was removed to be used for DNA extraction. The DNA barcoding of these specimens was conducted within the InBIO Barcoding Initiative (IBI), funded by EnvMetaGen and PORBIOTA projects. DNA barcode sequences were deposited in BOLD (Barcode of Life Data System) online database. Collected specimens and DNA extracts are deposited in the IBI collection at the CIBIO (Research Center in Biodiversity and Genetic Resources).

Записи данных

Данные этого находка ресурса были опубликованы в виде Darwin Core Archive (DwC-A), который является стандартным форматом для обмена данными о биоразнообразии в виде набора из одной или нескольких таблиц. Основная таблица данных содержит 2 записей.

Данный экземпляр IPT архивирует данные и таким образом служит хранилищем данных. Данные и метаданные ресурсов доступны для скачивания в разделе Загрузки. В таблице версий перечислены другие версии ресурса, которые были доступны публично, что позволяет отслеживать изменения, внесенные в ресурс с течением времени.

Версии

В таблице ниже указаны только опубликованные версии ресурса, которые доступны для свободного скачивания.

Как оформить ссылку

Исследователи должны дать ссылку на эту работу следующим образом:

Corley M, Ferreira S, Buchner P, Sousa P, Beja P (2020): The InBIO Barcoding Initiative Database: Depressaria infernella Corley & Buchner, a new Iberian species of the Depressaria douglasella group. v1.0. CIBIO (Research Center in Biodiversity and Genetic Resources) Portugal. Dataset/Occurrence. https://doi.org/10.15468/gcg7ny

Права

Исследователи должны соблюдать следующие права:

Публикующей организацией и владельцем прав на данную работу является CIBIO (Research Center in Biodiversity and Genetic Resources) Portugal. Эта работа находится под лицензией Creative Commons Attribution (CC-BY 4.0).

Регистрация в GBIF

Этот ресурс был зарегистрирован в GBIF, ему был присвоен следующий UUID: f90de717-7b3f-483f-aca2-46c300fe36a8.  CIBIO (Research Center in Biodiversity and Genetic Resources) Portugal отвечает за публикацию этого ресурса, и зарегистрирован в GBIF как издатель данных при оподдержке GBIF Portugal.

Ключевые слова

Lepidoptera; Species; Occurrence; Cytochrome c oxidase I (COI); DNA barcode; Continental Portugal; Occurrence

Контакты

Martin Corley
  • Metadata Provider ●
  • Originator
  • Researcher
  • Pucketty Farm Cottage
SN7 8JP Faringdon
Oxfordshire
GB
Sónia Ferreira
  • Metadata Provider ●
  • Originator ●
  • Point Of Contact
  • Post-Doc Researcher
CIBIO-InBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, Universidade do Porto
  • Campus Agrário de Vairão, Rua Padre Armando Quintas, nº 7
4485-661 Vairão
Porto
PT
  • +351 252660411
Peter Buchner
  • Metadata Provider
  • Researcher
A-2625 Schwarzau am Steinfeld
AT
Pedro Sousa
  • Metadata Provider ●
  • Originator
  • Post-Doc Researcher
CIBIO-InBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, Universidade do Porto
  • Campus Agrário de Vairão, Rua Padre Armando Quintas, nº 7
4485-661 Vairão
Porto
PT
  • +351 252660411
Pedro Beja
  • Metadata Provider ●
  • Originator ●
  • Point Of Contact
  • Coordinating Researcher
CIBIO-InBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, Universidade do Porto
  • Campus Agrário de Vairão, Rua Padre Armando Quintas, nº 7
4485-661 Vairão
Porto
PT
  • +351 252660411
Peter Buchner
  • Metadata Provider
  • Researcher
A-2625 Schwarzau am Steinfeld
AT

Географический охват

Continental Portugal.

Ограничивающие координаты Юг Запад [40,326, -7,573], Север Восток [41,766, -6,902]

Таксономический охват

This dataset is composed of data relating to two Lepidoptera specimens. Both specimens were determined to species level. The dataset is composed of two species, Depressaria infernella Corley & Buchner, 2019 and Agonopterix scopariella (Heinemann, 1870). Both species belong to the family Depressariidae.

Kingdom Animalia
Phylum Arthropoda
Class Insecta
Order Lepidoptera
Family Depressariidae

Временной охват

Дата начала / Дата окончания 2011-08-05 / 2015-06-19

Данные проекта

The InBIO Barcoding Initiative aims to develop a reference collection of DNA barcoding sequences covering Portuguese invertebrate taxa. Within the project, a special focus is afforded to insects, given their relevance to food webs, ecosystems functioning, high diversity and limited number of DNA barcoding sequences of interest.

Название The InBIO Barcoding Initiative Database: Depressaria infernella Corley & Buchner, a new Iberian species of the Depressaria douglasella group
Идентификатор InBIO Barcoding Initiative
Финансирование InBIO Barcoding Initiative is funded by the European Union’s Horizon 2020 Research and Innovation programme under grant agreement No 668981 and by the project PORBIOTA — Portuguese E-Infrastructure for Information and Research on Biodiversity (POCI-01-0145-FEDER-022127), supported by Operational Thematic Program for Competitiveness and Internationalization (POCI), under the PORTUGAL 2020 Partnership Agreement, through the European Regional Development Fund (FEDER).
Описание района исследования The two specimens were collected in the districts of Bragança and Guarda, in Continental Portugal, in 2011 and 2015.
Описание плана выполнения исследований The specimens in this dataset were collected in Continental Portugal in two field work incursions carried out in 2011 and 2015. Specimens were detected using a mercury-vapor lamps as lures.

Исполнители проекта:

Pedro Beja
  • Author
Sónia Ferreira
  • Author
Martin Corley
  • Author
Peter Buchner
  • Author
Pedro Sousa
  • Originator

Методы сбора

Specimens were captured in 2011 and 2015 in continental Portugal uisng mercury-vapor lamps as lures. Captured insects were preserved in 96% ethanol or in dry storage and stored at the InBIO Barcoding Initiative reference collection for downstream molecular analysis. Collected specimens were morphologically identified using a binocular stereoscopic microscope.

Охват исследования Specimens were collected in Continental Portugal in two field work incursions carried out in 2011 and 2015.
Контроль качества The DNA barcoded specimen morphological identification was contrasted with the results of the Blast of the newly generated DNA barcode in BOLD Identification Engine. Prior submission to GBIF, data was checked for errors and inconsistencies with OpenRefine 3.3 (http://openrefine.org/).

Описание этапа методики:

  1. Specimens were captured in two localities of continental Portugal, in 2011 and 2015, using mercury-vapor lamps as lures.
  2. Captured specimens were preserved in 96% ethanol or in dry storage.
  3. The specimens were morphologically identified using a binocular stereoscopic microscope and resorting to available literature (Corley, Buchner & Ferreira, 2019; Hannemann, 1953; Palm, 1989.)
  4. A DNA barcode was sequenced from a tissue sample, one leg, that was removed. DNA was then extracted, and a 658 bp COI DNA barcode fragment was amplified and sequenced.
  5. The obtained sequences were submitted to BOLD database and the specimen morphological identification was contrasted with the results of the BLAST of the newly generated DNA barcode in BOLD Identification Engine.
  6. Prior submission to GBIF, data was checked for errors and inconsistencies with OpenRefine 3.3 (http://openrefine.org/).

Данные коллекции

Название коллекции InBIO Barcoding Initiative
Идентификатор коллекции 4ec2b246-f5fa-4b90-9a8d-ddafc2a3f970
Идентификатор родительской коллекции CIBIO (Research Center in Biodiversity and Genetic Resources) Portugal
Методы сохранения образцов Alcohol
Единицы хранения Между 1 и 2 Voucher tube ,  Между 1 и 2 DNA extractions

Библиографические ссылки

  1. Corley, M. F. V., Buchner, P. & Ferreira, S. (2019). Depressaria infernella Corley & Buchner, a new Iberian species of the Depressaria douglasella group (Lepidoptera: Depressariidae). SHILAP, Revista de Lepidopterología, 47(186): 293-300.
  2. Hannemann, H. J., 1953. Natürliche Gruppierung der europäischen Arten der Gattung Depressaria s. l. (Lep. Oecoph.).– Mitteilungen aus dem Zoologischen Museum in Berlin, 29: 269-373.
  3. Palm, E., 1989. Nordeuropas Prydvinger (Lepidoptera: Oecophoridae).– Danmarks Dyreliv, 4: 1-247.

Дополнительные метаданные

Цель

The InBIO Barcoding Initiative (IBI) aims to develop a reference collection of DNA barcoding sequences primarily covering Portuguese invertebrate taxa providing a tool in ecological studies.
Альтернативные идентификаторы f90de717-7b3f-483f-aca2-46c300fe36a8
http://ipt.gbif.pt/ipt/resource?r=ibi_lepidoptera_depressaria_infernella